1. Zhang G, Cui C, Wangdue S, Lu H, Chen H, Xi L, He W, Yuan H, Tsring T, Chen Z, Yang F, Tsering T, Li S, Tashi N, Yang T, Tong Y, Wu X, Li L, He Y, Cao P, Dai Q, Liu F, Feng X, Wang T, Yang R, Ping W, Zhang M, Gao X, Liu Y*, Wang W*, Fu Q*. Maternal genetic history of ancient Tibetans over the past 4,000 years. Journal of Genetics and Genomics. 2023 Mar 16:S1673-8527(23)00071-1.  

2. Wang H, Yang MA, Wangdue S, Lu H, Chen H, Li L, Dong G, Tsring T, Yuan H, He W, Ding M, Wu X, Li S, Tashi N, Yang T, Yang F, Tong Y, Chen Z, He Y, Cao P, Dai Q, Liu F, Feng X, Wang T, Yang R, Ping W, Zhang Z, Gao Y, Zhang M, Wang X, Zhang C, Yuan K, Ko AM, Aldenderfer M, Gao X, Xu S, Fu Q*. Human genetic history on the Tibetan Plateau in the last 5,100 years. Science Advances. 2023 Mar 15;9(11):eadd5582.  

3. Miao B, Liu Y, Yang R, Feng X, Liu F, Cao P, Dai Q, Ping W, Liu Y*, Fu Q*. Assessment of contaminants associated with gold-standard ancient DNA protocols. Sci Bull. 2023 Jan 15;68(1):5-9. 

4. Zhu S, Chen Z, Hu S, Wang W, Cao P, Liu F, Dai Q, Feng X, Yang R, Ping W, Fu Q*. Ancient DNA traces a Chinese 5400-year-old cat specimen as leopard cat (Prionailurus bengalensis). J Genet Genomics. 2022 Jul 31:S1673-8527(22)00196-5.  

5. Liu Y, Bennett E.A., Fu Q*. Evolving ancient DNA techniques and the future of human history. Cell. 2022 Jul 21;185(15):2632-2635. 

6. Xue J, Wang W, Shao J, Dai X, Sun Z, Gardner JD, Chen L, Guo X, Di N, Pei X, Wu X, Zhang G, Cui C, Cao P, Liu F, Dai Q, Feng X, Yang R, Ping W, Zhang L, He N*, Fu Q*. Ancient Mitogenomes Reveal the Origins and Genetic Structure of the Neolithic Shimao Population in Northern China. Front Genet. 2022 May 27;13:146-160.  

7. Kumar V, Wang W, Zhang J, Wang Y, Ruan Q, Yu J, Wu X, Hu X, Wu X, Guo W, Wang B, Niyazi A, Lv E, Tang Z, Cao P, Liu F, Dai Q, Yang R, Feng X, Ping W, Zhang L, Zhang M, Hou W, Liu Y*, Bennett EA*, Fu Q*. Bronze and Iron Age population movements underlie Xinjiang population history. Science. 2022 Apr;376(6588):62-69.  

8. Zhang M, Liu Y, Li Z, Lü P, Gardner JD, Ye M, Wang J, Yang M, Shao J, Wang W, Dai Q, Cao P, Yang R, Liu F, Feng X, Zhang L, Li E, Shi Y, Chen Z, Zhu S, Zhai W, Deng T, Duan Z, Bennett EA*, Hu S*, Fu Q*. Ancient DNA reveals the maternal genetic history of East Asian domestic pigs. Journal of Genetics and Genomics. 2021 Dec 10:S1673-8527(21)00368-4.  

9. Zhang F, Ning C, Scott A, Fu Q, Bj？rn R, Li W, Wei D, Wang W, Fan L, Abuduresule I, Hu X, Ruan Q, Niyazi A, …, Kumar V, Krause J*, Warinner C*, Jeong C*, Cui Y*. The genomic origins of the Bronze Age Tarim Basin mummies. Nature. 2021 Nov;599(7884):256-261.  

10. Alpaslan-Roodenberg S, Anthony D, Babiker H, Bánffy E, Booth T, Capone P, Deshpande-Mukherjee A, Eisenmann S, Fehren-Schmitz L, Frachetti M, Fujita R, Frieman CJ, Fu Q, …, Wang CC, Warinner C, Yasawardene S, Zahir M. Ethics of DNA research on human remains: five globally applicable guidelines. Nature. 2021 Nov;599(7883):41-46. 

11. Liu Y, Mao X, Krause J, Fu Q*. Insights into human history from the first decade of ancient human genomics. Science. 2021 Sep 24;373(6562):1479-1484.  

12. Liu Y, Wang T, Wu X, Fan X, Wang W, Xie G, Li Z, Yang Q, Cao P, Yang R, Liu F, Dai Q, Feng X, Ping W, Miao B, Wu Y, Liu Y, Fu Q*. Maternal genetic history of southern East Asians over the past 12,000 years. Journal of Genetics and Genomics. 2021 Oct 20;48(10):899-907.  

13. Kumar V*, Bennett EA, Zhao D, Liang Y, Tang Y, Ren M, Dai Q, Feng X, Cao P, Yang R, Liu F, Ping W, Zhang M, Ding M, Yang MA, Amridin B, Muttaliu H, Wang J*, Fu Q*. Genetic continuity of Bronze Age ancestry with increased Steppe-related ancestry in Late Iron Age Uzbekistan. Molecular Biology Evolution. 2021 Oct 27;38(11):4908-4917.  

14. Miao B, Liu Y, Gu W, Wei Q, Wu Q, Wang W, Zhang M, Ding M, Wang T, Liu J, Liu F, Cao P, Dai Q, Yang R, Feng X, Ping W, Hou W, Yuan H, Fu Q*. Maternal genetic structure of a Neolithic population of the Yangshao culture. Journal of Genetics and Genomics. 2021 Aug 20;48(8):746-750.  

15. Wang T, Wang W, Xie G, Li Z, Fan X, Yang Q, Wu X, Cao P, Liu Y, Yang R, Liu F, Dai Q, Feng X, Wu X, Qin L, Li F, Ping W, Zhang L, Zhang M, Liu Y, Chen X, Zhang D, Zhou Z, Wu Y, Shafiey H, Gao X, Curnoe D, Mao X, Bennett E.A, Ji X*, Yang M.A.*, Fu Q*. Human population history at the crossroads of East and Southeast Asia since 11,000 years ago. Cell. 2021 Jul 8;184(14):3829-3841.  

16. Mao X, Zhang H*, Qiao S, Li M, Chang F, Xie P, Wang T, Cao P, Yang R, Liu F, Dai Q, Feng X, Ping W, Zhang M, Lei C, Olsen J.W., Liu Y, Bennett E.A., Fu Q*. The deep population history of Northeast Asia from the Late Pleistocene to the Holocene. Cell. 2021 Jun 10;184(12):3256-3266.  

17. Zhang M, Cao P, Dai Q, Wang Y, Feng X, Wang H, Wu H, Ko AM, Mao X, Liu Y, Yu L, Roos C, Nadler T, Xiao W, Bennett EA*, Fu Q*. Comparative analysis of DNA extraction protocols for ancient soft tissue museum samples. Zoological Research. 2021 May 18;42(3):280-286.  

18. Hajdinjak M*, Mafessoni F, Skov L, Vernot B, Hu？bner A, Fu Q, ..., McPherron S.P., Tsanova T, Hublin J, Peter B.M., Meyer M, Skoglund P, Kelso J & Paabo S*. Initial Upper Palaeolithic humans in Europe had recent Neanderthal ancestry. Nature. 2021 Apr;592(7853):253-257. 

19. Wang W, Ding M, Gardner J.D., Wang Y, Miao B, Guo W, Wu X, Ruan Q, Yu J, Hu X, Wang B, Wu X, Tang Z, Niyazi A, Zhang J, Chang X, Tang Y, Ren M, Cao P, Liu F, Dai Q, Feng X, Yang R, Zhang M, Wang T, Ping W, Hou W, Li W, Ma J, Kumar V*, Fu Q*. Ancient Xinjiang mitogenomes reveal intense admixture with high genetic diversity. Science Advances. 2021 Mar 31;7(14):eabd6690.  

20. Liu J, Zeng W, Sun B, Mao X, Zhao Y, Wang F, Li Z, Luan F, Guo J, Zhu C, Wang Z, Wei C, Zhang M, Cao P, Liu F, Dai Q, Feng X, Yang R, Hou W, Ping W, Wu X, Bennett E.A., Liu Y, Fu Q*. Maternal genetic structure in ancient Shandong between 9500 and 1800 years ago. Science Bulletin. 2021 June 15;66(11):1129-1135.  

21. Orlando L*, Allaby R, Skoglund P, Sarkissian C.D., Stockhammer P.W., ávila-Arcos M.C., Fu Q, Krause J, Willerslev E, Stone A.C. and Warinner C. Ancient DNA analysis. Nature Reviews Methods Primers. 2021;1:14. 

22. Kuang W, Hu J, Wu H, Fen X, Dai Q, Fu Q, Xiao W, Frantz L, Roos C, Nadler T, Irwin DM, Zhou L, Yang X, Yu L*. Genetic Diversity, Inbreeding Level, and Genetic Load in Endangered Snub-Nosed Monkeys (Rhinopithecus). Frontiers in Genetics. 2020 Dec 15;11:615926. 

23. Zhang D*, Xia H, Chen F, Li B*, Slon V, Cheng T, Yang R, Jacobs Z, Dai Q, Massilani D, Shen X, Wang J, Feng X, Cao P, Yang M.A., Yao J, Yang J, Madsen D, Han Y, Ping W, Liu F, Perreault C, Chen X, Meyer M, Kelso J, Paabo S* and Fu Q*. Denisovan DNA in Late Pleistocene sediments from Baishiya Karst Cave on the Tibetan Plateau. Science. 2020 Oct;370(6516):584-587.  

24. Petr M*, Hajdinjak M, Fu Q, Essel E, Rougier H, Crevecoeur I, Semal P, Golovanova LV, Doronichev VB, Lalueza-Fox C, de la Rasilla M, Rosas A, Shunkov MV, Kozlikin MB, Derevianko AP, Vernot B, Meyer M, Kelso J*. The evolutionary history of Neanderthal and Denisovan Y chromosomes. Science. 2020 Sep 25;369(6511):1653-1656. 

25. Bai F, Zhang X, Ji X, Cao P, Feng X, Yang R, Peng M, Pei S, Fu Q*. Paleolithic genetic link between Southern China and Mainland Southeast Asia revealed by ancient mitochondrial genome. Journal of Human Genetics. 2020 July; 65(12):1125-1128.  

26. Zhang M, Fu Q*. Human evolutionary history in Eastern Eurasia using insights from ancient DNA. Current Opinion in Genetics & Development. 2020 July;62:78-84.  

27. Yang MA, Fan X, Sun B, Chen C, Lang J, Ko Y, Tsang C, Chiu H, Wang T, Bao Q, Wu X, Hajdinjak M, Min-shan Ko A, Ding M, Cao P, Yang R, Liu F, Nickel B, Dai Q, Feng X, Zhang L, Sun C, Ning C, Zeng W, Zhao Y, Zhang M, Gao X, Cui Y, Reich D, Stoneking M, Fu Q*. Ancient DNA indicates human population shifts and admixture in northern and southern China. Science. 2020 May;369(6501):282-288.  

28. Zhang M, Sun G, Ren L, Yuan H, Dong G, Zhang L, Liu F, Cao P, Ko AM, Yang MA, Hu S*, Wang GD*, Fu Q*. Ancient DNA evidence from China reveals the expansion of Pacific dogs. Molecular Biology and Evolution. 2020 May;37(5):1462-1469.  

29. Ding M, Wang T, Min-Shan Ko A, Chen H, Wang H, Dong G, …, Wang H, Yang MA, Fu Q*. Ancient mitogenomes show plateau populations from last 5200 years partially contributed to present-day Tibetans. Proceedings of the Royal Society B: Biological Sciences. 2020 Mar;287(1923):20192968.  

30. Wang GD, Zhang M, Wang X, Yang MA, Cao P, Liu F, Lu H, Feng X, Skoglund P, Wang L, Fu Q*, Zhang YP*. Genomic Approaches Reveal an Endemic Subpopulation of Gray Wolves in Southern China. iScience. 2019 Oct. 25;20:110-118.  

31. Sikora M*, Pitulko VV*, Sousa VC, Allentoft ME, Vinner L, Rasmussen S, Margaryan A, de Barros Damgaard P, de la Fuente C, Renaud G, Yang MA, Fu Q, Dupanloup I, Giampoudakis K, Nogués-Bravo D, …, Meltzer DJ, Excoffier L*, Willerslev E*. The population history of northeastern Siberia since the Pleistocene. Nature. 2019 Jun;570(7760):182-188. 

32. Wang X, Zhou BW, Yang MA, Yin TT, Chen FL, Ommeh SC, Esmailizadeh A, Turner MM, Poyarkov AD, Savolainen P, Wang GD*, Fu Q*, Zhang YP*. Canine transmissible venereal tumor genome reveals ancient introgression from coyotes to pre-contact dogs in North America. Cell Research. 2019 Jul;29(7):592-595.  

33. Chen F*, Welker F, Shen CC, Bailey SE, Bergmann I, Davis S, Xia H, Wang H, Fischer R, Freidline SE, Yu TL, Skinner MM, Stelzer S, Dong G, Fu Q, Dong G, Wang J, Zhang D*, Hublin JJ*. A late Middle Pleistocene Denisovan mandible from the Tibetan Plateau. Nature. 2019 May;569(7756):409-412. 

34. Liu S, Huang S, Chen F, Zhao L, Yuan Y, Francis SS, Fang L, Li Z, Lin L, Liu R, Zhang Y, Xu H, Li S, Zhou Y, Davies RW, Liu Q, Walters RG, Lin K, Ju J, Korneliussen T, Yang MA, Fu Q, Wang J*, Zhou L, Krogh A, Zhang H, Wang W, Chen Z, Cai Z, Yin Y, Yang H, Mao M, Shendure J, Wang J, Albrechtsen A*, Jin X*, Nielsen R*, Xu X*. Genomic Analyses from Non-invasive Prenatal Testing Reveal Genetic Associations, Patterns of Viral Infections, and Chinese Population History. Cell. 2018 Oct 4;175(2):347-359. 

35. Min-Shan Ko A, Zhang Y, Yang MA, Hu Y, Cao P, Feng X, Zhang L, Wei F, Fu Q*. Mitochondrial Genome of a 22,000-year-old Giant Panda from Southern China Reveals a New Panda Lineage. Current Biology. 2018 Jun 18;28(12):R693-R694.  

36. Hajdinjak M*, Fu Q, Hübner A, Petr M, Mafessoni F, Grote S, Skoglund P, Narasimham V, Rougier H, Crevecoeur I, Semal P, Soressi M, …, Meyer M, Paabo S*, Kelso J*. Reconstructing the genetic history of late Neandertals. Nature. 2018 Mar 29;555(7698):652-656. 

37. Yang, M.A & Fu Q*. Insights into Modern Human Prehistory Using Ancient Genomes. Trends in Genetics. 2018 Mar;34(3):184-196.  

38. Li J, Zeng W, Zhang Y, Ko AM, Li C, Zhu H, Fu Q*, Zhou H*. Ancient DNA reveals genetic connections between early Di-Qiang and Han Chinese. BMC Evolutionary Biology. 2017 Dec 4;17(1):239.  

39. Prüfer K*, de Filippo C, Grote S, Mafessoni F, Korlevic P, Hajdinjak M, Vernot B, Skov L, Hsieh P, Peyrégne S, Reher D, Hopfe C, Nagel S, Maricic T, Fu Q, …, Meyer M, Paabo S*. A high-coverage Neandertal genome from Vindija Cave in Croatia. Science. 2017 Nov 3;358(6363):655-658. 

40. Yang MA, Gao X, Theunert C, Tong H, Aximu-Petri A, Nickel B, Slatkin M, Meyer M, Paabo S, Kelso J*, Fu Q*. 40,000-Year-Old Individual from Asia Provides Insight into Early Population Structure in Eurasia. Current Biology. 2017 Oct 23;27(20):3202-3208.  

41. Skoglund P*, Posth C, Sirak K, Spriggs M, Valentin F, Bedford S, Clark GR, Reepmeyer C, Petchey F, Fernandes D, Fu Q, Harney E, Lipson M, …, Krause J, Pinhasi R*, Reich D*. Genomic insights into the peopling of the Southwest Pacific. Nature. 2016 Oct 27;538(7626):510-513. 

42. Mallick S*, Li H, Lipson M, Mathieson I, Gymrek M, Racimo F, Zhao M, Chennagiri N, Nordenfelt S, Tandon A, Skoglund P, Lazaridis I, Sankararaman S, Fu Q, Rohland N, …, Patterson N, Reich D*. The Simons Genome Diversity Project: 300 genomes from 142 diverse populations. Nature. 2016 Oct 13;538(7624):201-206. 

43. Lazaridis I*, Nadel D, Rollefson G, Merrett DC, Rohland N, Mallick S, Fernandes D, Novak M, Gamarra B, Sirak K, Connell S, Stewardson K, Harney E, Fu Q, Gonzalez-Fortes G, …, Patterson N, Pinhasi R*, Reich D*. Genomic insights into the origin of farming in the ancient Near East. Nature. 2016 Aug 25;536(7617):419-424. 

44. Fu Q, Posth C, Hajdinjak M, Petr M, Mallick S, Fernandes D, Furtwangler A, Haak W, Meyer M, Mittnik A, …, Patterson N, Krause J*, Pabo S*, Reich D*. The genetic history of Ice Age Europe. Nature. 2016 Jun 9;534(7606):200-205.  

45. Moorjani P*, Sankararaman S, Fu Q, Przeworski M, Patterson N, Reich D*. A genetic method for dating ancient genomes provides a direct estimate of human generation interval in the last 45,000 years. Proceedings of the National Academy of Sciences of the United States of America. 2016 May 17;113(20):5652-5657. 

46. Kuhlwilm M, Gronau I, Hubisz MJ, de Filippo C, Prado-Martinez J, Kircher M, Fu Q, Burbano HA, Lalueza-Fox C, …, Paabo S, Meyer M, Siepel A*, Castellano S*. Ancient gene flow from early modern humans into Eastern Neanderthals. Nature. 2016 Feb 25;530(7591):429-433. 

47. Key FM, Fu Q, Romagné F, Lachmann M, Andrés AM*. Human adaptation and population differentiation in the light of ancient genomes. Nature Communications. 2016 Mar 18;7:10775.  

48. Fu Q, Hajdinjak M, Moldovan OT, Constantin S, Mallick S, Skoglund P, Patterson N, Rohland N, Lazaridis I, Nickel B, Viola B, Prüfer K, Meyer M, Kelso J, Reich D*, Paabo S*. An early modern human from Romania with a recent Neanderthal ancestor. Nature. 2015 Aug 13;524(7564):216-219.  

49. Haak W, Lazaridis I, Patterson N, Rohland N, Mallick S, Llamas B, Brandt G, Nordenfelt S, Harney E, Stewardson K, Fu Q, Mittnik A, Bánffy E, Alt KW, Reich D*. Massive migration from the steppe was a source for Indo-European languages in Europe. Nature. 2015 Jun 11;522(7555):207-211.   

50. Fu Q*, Li H, Moorjani P, Jay F, Slepchenko SM, Bondarev AA, Johnson PL, Aximu-Petri A, Prüfer K, de Filippo C, Meyer M, …, Hublin JJ, Reich D*, Kelso J*, Viola TB*, Paabo S. Genome sequence of a 45,000-year-old modern human from western Siberia. Nature. 2014 Oct 23;514(7523):445-449.  

51. Lazaridis I, Patterson N, Mittnik A, Renaud G, Mallick S, Kirsanow K, Sudmant PH, Schraiber JG, Castellano S, Lipson M, Berger B, Economou C, Bollongino R, Fu Q, Bos KI, …, Paabo S, Kelso J, Reich D*, Krause J*. Ancient human genomes suggest three ancestral populations for present-day Europeans. Nature. 2014 Sep 18;513(7518):409-413.   

52. Castellano S*, Parra G, Sánchez-Quinto FA, Racimo F, Kuhlwilm M, Kircher M, Sawyer S, Fu Q, Heinze A, Nickel B, Dabney J, Siebauer M, White L, …, Andrés AM, Paabo S*. Patterns of coding variation in the complete exomes of three Neandertals. Proceedings of the National Academy of Sciences of the United States of America. 2014 May 6;111(18):6666-6671. 

53. Ko AM, Chen CY, Fu Q, Delfin F, Li M, Chiu HL, Stoneking M*, Ko YC*. Early Austronesians: into and out of Taiwan. American Journal of Human Genetics. 2014 Mar 6;94(3):426-436.   

54. Prüfer K, Racimo F, Patterson N, Jay F, Sankararaman S, Sawyer S, Heinze A, Renaud G, Sudmant PH, de Filippo C, Li H, Mallick S, Dannemann M, Fu Q, Kircher M, …, Reich D*, Kelso J, Paabo S*. The complete genome sequence of a Neanderthal from the Altai Mountains. Nature. 2014 Jan 2;505(7481):43-49. 

55. Meyer M*, Fu Q, Aximu-Petri A, Glocke I, Nickel B, Arsuaga JL, Martínez I, Gracia A, de Castro JM, Carbonell E, Paabo S. A mitochondrial genome sequence of a hominin from Sima de los Huesos. Nature. 2014 Jan 16;505(7483):403-406. 

56. Benazzi S*, Peresani M, Talamo S, Fu Q, Mannino MA, Richards MP, Hublin JJ. A reassessment of the presumed Neandertal remains from San Bernardino Cave, Italy. Journal of Human Evolution. 2014 Jan;66:89-94. 

57. Fu Q, Mittnik A, Johnson PLF, Bos K, Lari M, Bollongino R, Sun C, Giemsch L, Schmitz R, Burger J, Ronchitelli AM, Martini F, Cremonesi RG, Svoboda J, Bauer P, Caramelli D, Castellano S, Reich D, Paabo S, Krause J*. A revised timescale for human evolution based on ancient mitochondrial genomes. Current Biology. 2013 Apr 8;23(7):553-559. 

58. Fu Q*, Meyer M, Gao X, Stenzel U, Burbano HA, Kelso J, Paabo S*. DNA analysis of an early modern human from Tianyuan Cave, China. Proceedings of the National Academy of Sciences of the United States of America. 2013 Feb 5;110(6):2223-2227.  

59. Fu Q*, Rudan P, Paabo S, Krause J. Complete mitochondrial genomes reveal neolithic expansion into Europe. PLoS One. 2012;7(3):e32473.  

60. Meyer M*, Kircher M, Gansauge MT, Li H, Racimo F, Mallick S, Schraiber JG, Jay F, Prüfer K, de Filippo C, Sudmant PH, Alkan C, Fu Q, Do R, Rohland N, …, Slatkin M, Reich D*, Kelso J, Paabo S*. A high-coverage genome sequence from an archaic Denisovan individual. Science. 2012 Oct 12;338(6104):222-226. 

61. Reich D*, Green RE, Kircher M, Krause J, Patterson N, Durand EY, Viola B*, Briggs AW, Stenzel U, Johnson PL, Maricic T, Good JM, Marques-Bonet T, Alkan C, Fu Q, …, Slatkin M, Paabo S*. Genetic history of an archaic hominin group from Denisova Cave in Siberia. Nature. 2010 Dec 23;468(7327):1053-1060. 

62. Krause J*, Fu Q, Good JM, Viola B, Shunkov MV, Derevianko AP, Paabo S. The complete mitochondrial DNA genome of an unknown hominin from southern Siberia. Nature. 2010 Apr 8;464(7290):894-897. 

63. Fu Q, Jin S, Hu Y*, Ma Z, Pan J, Wang C. Agricultural development and human diets in Gouwan site, Xichuan, Henan. Chinese Science Bulletin. 2010, 55(7): 614-620.